In modify JBrowse source code you must use npm run watch (equivalently yarn watch) to watch for changes to the codebase Reason: JBrowse switched to a webpack based build system in 1.13.0 which bundles all dependencies at build time so there is no notion of run-time module resolution How do I modify JBrowse source code setup.sh automatically downloads the npm modules needed for building the codebase. setup.sh (you can add a "-f" to this command to make it go faster if you've run setup before) put the plugin(s) in the plugins folder.download the "-dev" version of JBrowse (or use a git clone, this is equivalent).In JBrowse 1.13.0 and later, you must rebuild JBrowse You can also just copy and paste your entire jbrowse directory that you cloned into your webserver folder if you have an existing apache or nginx server How do I use plugins with JBrowse Using npm run start launches an express.js server on port 8082 General How do I get started with JBrowse quickly git clone
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